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LOC4338104 abscisic acid receptor PYL5-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4338104, updated on 17-Jul-2024
Gene symbol
LOC4338104
Gene description
abscisic acid receptor PYL5-like
Locus tag
OSNPB_050213500
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
PYL5; PYL11; RCAR5; OsPYL5; OsPYL11
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See LOC4338104 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (7057670..7060102)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (7034284..7036745)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene bisdemethoxycurcumin synthase-like Neighboring gene bisdemethoxycurcumin synthase-like Neighboring gene uncharacterized LOC107280862 Neighboring gene uncharacterized LOC4338105

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables abscisic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein phosphatase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in abscisic acid-activated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
abscisic acid receptor PYL5
Names
Abscisic acid receptor PYL5
LOC_Os05g12260
OSJNBb0067H15.8
PYR1-like protein 11
PYR1-like protein 5
Regulatory components of ABA receptor 5
abscisic acid receptor PYL8

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001420276.1 → NP_001407205.1  abscisic acid receptor PYL5

    Status: VALIDATED

    Source sequence(s)
    CI165089, CI254644, CI564224, CI699601
    UniProtKB/Swiss-Prot
    K4NDW6, Q6I5C3
    UniProtKB/TrEMBL
    B8AZ74

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    7057670..7060102
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6I5C3.1 GenPept UniProtKB/Swiss-Prot:Q6I5C3

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials