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LOC4338095 protein timeless homolog [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4338095, updated on 3-Jun-2019

Summary

Gene symbol
LOC4338095
Gene description
protein timeless homolog
Locus tag
OSNPB_050210500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Biased expression in flowers (RPKM 2.1), flower buds (RPKM 1.6) and 2 other tissues See more

Genomic context

See LOC4338095 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
20
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (6843388..6853105, complement)

Chromosome 5 - NC_029260.1Genomic Context describing neighboring genes Neighboring gene GDSL esterase/lipase At1g28580 Neighboring gene GDSL esterase/lipase At5g45910 Neighboring gene TPR repeat-containing thioredoxin TTL1 Neighboring gene uncharacterized LOC9271398

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

General protein information

Preferred Names
protein timeless homolog
Names
Os05g0210500

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029260.1 Reference IRGSP-1.0 Primary Assembly

    Range
    6843388..6853105 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015781955.2XP_015637441.1  protein timeless homolog

    Conserved Domains (2) summary
    pfam05029
    Location:7241246
    TIMELESS_C; Timeless protein C terminal region
    pfam04821
    Location:27282
    TIMELESS; Timeless protein
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