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LOC4337996 glutamine--tRNA ligase [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4337996, updated on 9-Aug-2018

Summary

Gene symbol
LOC4337996
Gene description
glutamine--tRNA ligase
Locus tag
OSNPB_050182800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 19.9), leaves before flowering (RPKM 14.4) and 6 other tissues See more

Genomic context

See LOC4337996 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
22
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (4976744..4981857, complement)

Chromosome 5 - NC_029260.1Genomic Context describing neighboring genes Neighboring gene FACT complex subunit SSRP1-B-like Neighboring gene uncharacterized LOC4337995 Neighboring gene uncharacterized LOC4337997 Neighboring gene probable WRKY transcription factor 50

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

General gene information

Homology

General protein information

Preferred Names
glutamine--tRNA ligase
Names
Os05g0182800

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029260.1 Reference IRGSP-1.0 Primary Assembly

    Range
    4976744..4981857 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015784471.2XP_015639957.1  glutamine--tRNA ligase

    UniProtKB/TrEMBL
    Q65WY6
    Conserved Domains (5) summary
    PLN02859
    Location:12795
    PLN02859; glutamine-tRNA ligase
    pfam03950
    Location:579770
    tRNA-synt_1c_C; tRNA synthetases class I (E and Q), anti-codon binding domain
    pfam04557
    Location:173264
    tRNA_synt_1c_R2; Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2
    pfam04558
    Location:19170
    tRNA_synt_1c_R1; Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1
    cl00015
    Location:271576
    nt_trans; nucleotidyl transferase superfamily
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