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LOC4337924 transmembrane 9 superfamily member 12 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4337924, updated on 12-Jul-2024
Gene symbol
LOC4337924
Gene description
transmembrane 9 superfamily member 12
Locus tag
OSNPB_050168500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (4125997..4128715, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (4107119..4109919, complement)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, chloroplastic Neighboring gene uncharacterized LOC4337923 Neighboring gene UDP-xylose transporter 3 Neighboring gene protein NETWORKED 4A

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein localization to membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
transmembrane 9 superfamily member 12
Names
Os05g0168500

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    4125997..4128715 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015784461.3 → XP_015639947.1  transmembrane 9 superfamily member 12

    UniProtKB/TrEMBL
    B8AYG8, B9FHR3, Q0DKF4, Q60DU0
    Conserved Domains (1) summary
    pfam02990
    Location:60 → 608
    EMP70; Endomembrane protein 70
Nucleotide Protein
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