U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4337828 ATP-dependent DNA helicase Q-like SIM [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4337828, updated on 16-Jun-2026
Gene symbol
LOC4337828
Gene description
ATP-dependent DNA helicase Q-like SIM
Locus tag
OSNPB_050150600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Try the new Gene page
Try the new Transcripts and proteins table
See LOC4337828 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (2920681..2928206, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (2905957..2913805, complement)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene double-stranded RNA-binding protein 2-like Neighboring gene uncharacterized LOC136356499 Neighboring gene transport inhibitor response 1-like protein Os05g0150500 Neighboring gene heavy metal-associated isoprenylated plant protein 36 Neighboring gene bifunctional protein FolD 2

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5' DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables four-way junction helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
ATP-dependent DNA helicase Q-like SIM
Names
Os05g0150600
putative DNA helicase RecQsim

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    2920681..2928206 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015785195.3 → XP_015640681.1  ATP-dependent DNA helicase Q-like SIM isoform X1

    UniProtKB/TrEMBL
    B8AY50
    Conserved Domains (1) summary
    COG0514
    Location:161 → 789
    RecQ; Superfamily II DNA helicase RecQ [Replication, recombination and repair]

  2. XM_066310750.1 → XP_066166847.1  ATP-dependent DNA helicase Q-like SIM isoform X2

    UniProtKB/TrEMBL
    B8AY50, Q0DKP2, Q5WN04

RNA

  1. XR_010741544.1 RNA Sequence

  2. XR_001546292.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials