U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4337286 inositol-pentakisphosphate 2-kinase IPK1-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4337286, updated on 18-Sep-2024
Gene symbol
LOC4337286
Gene description
inositol-pentakisphosphate 2-kinase IPK1-like
Locus tag
OSNPB_040661200
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
IPK1; OsIPK1; OsJ_16498
Try the new Gene page
Try the new Transcripts and proteins table
See LOC4337286 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (34255104..34259372, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (33735161..33739892, complement)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene protein NRT1/ PTR FAMILY 2.13 Neighboring gene heavy metal-associated isoprenylated plant protein 43 Neighboring gene protein HEAT INTOLERANT 4 Neighboring gene uncharacterized LOC107280786

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Development of low phytate rice by RNAi mediated seed-specific silencing of inositol 1,3,4,5,6-pentakisphosphate 2-kinase gene (IPK1). Ali N, et al. PLoS One, 2013. PMID 23844166, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables inositol-1,3,4,5,6-pentakisphosphate 2-kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in inositol phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
inositol-pentakisphosphate 2-kinase IPK1
Names
Inositol-1,3,4,5,6-pentakisphosphate 2-kinase IPK1
Ins(1,3,4,5,6)P5 2-kinase
InsP5 2-kinase 1
LOC_Os04g56580
OSJNBa0015K02.18
NP_001406839.1
XP_066165299.1

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001419910.1 → NP_001406839.1  inositol-pentakisphosphate 2-kinase IPK1

    Status: VALIDATED

    Source sequence(s)
    AK102842, CI080464, CI588616, CI642535
    UniProtKB/Swiss-Prot
    A0A0P0WFU5, B8AVX5, Q01JL1, Q7XQZ6

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    34255104..34259372 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066309202.1 → XP_066165299.1  inositol-pentakisphosphate 2-kinase IPK1 isoform X1

    UniProtKB/Swiss-Prot
    A0A0P0WFU5, B8AVX5, Q01JL1, Q7XQZ6
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7XQZ6.1 GenPept UniProtKB/Swiss-Prot:Q7XQZ6

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials