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LOC4337276 probable protein phosphatase 2C 45 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4337276, updated on 3-Dec-2024
Gene symbol
LOC4337276
Gene description
probable protein phosphatase 2C 45
Locus tag
OSNPB_040659500
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
24K23.16; OsPP2C45; OsJ_015762
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See LOC4337276 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (34169439..34173742, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (33649619..33653878, complement)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene cysteine-rich receptor-like protein kinase 6 Neighboring gene protein EMSY-LIKE 3 Neighboring gene BTB/POZ and MATH domain-containing protein 1 Neighboring gene probable amino acid permease 7

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cation binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-threonine dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
probable protein phosphatase 2C 45
Names
LOC_Os04g56450
OSJNBa0011F23.20
OSJNBa0015K02.7
putative protein phosphatase 2C
NP_001389381.1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402452.1 → NP_001389381.1  probable protein phosphatase 2C 45

    Status: VALIDATED

    Source sequence(s)
    AK059302, CB642176, CI068627, CI078288, CI523372
    UniProtKB/Swiss-Prot
    A0A0P0WFU4, Q0J9D6, Q7XR06
    UniProtKB/TrEMBL
    A2XYI8, Q01I02, Q8S3P1

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    34169439..34173742 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7XR06.2 GenPept UniProtKB/Swiss-Prot:Q7XR06

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials