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LOC4336976 40S ribosomal protein S11 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336976, updated on 9-Aug-2018

Summary

Gene symbol
LOC4336976
Gene description
40S ribosomal protein S11
Locus tag
OSNPB_040613600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 198.3), milk grains (RPKM 132.5) and 6 other tissues See more

Genomic context

See LOC4336976 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (31105970..31107929)

Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene CCR4-NOT transcription complex subunit 9 Neighboring gene 40S ribosomal protein S11 Neighboring gene UDP-N-acetylglucosamine diphosphorylase 2 Neighboring gene methyl-CpG-binding domain-containing protein 13

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

General gene information

Homology

  • Homologs of the LOC4336976 gene: The LOC4336976 gene is conserved in human, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, A.thaliana, rice, and frog.
  • Orthologs

General protein information

Preferred Names
40S ribosomal protein S11
Names
Os04g0613600

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

    Range
    31105970..31107929
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015781147.2XP_015636633.1  40S ribosomal protein S11

    UniProtKB/TrEMBL
    Q7XIK5
    Conserved Domains (3) summary
    PRK08572
    Location:37144
    rps17p; 30S ribosomal protein S17P; Reviewed
    pfam00366
    Location:74142
    Ribosomal_S17; Ribosomal protein S17
    pfam16205
    Location:472
    Ribosomal_S17_N; Ribosomal_S17 N-terminal
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