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LOC4336813 alpha-1,3/1,6-mannosyltransferase ALG2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336813, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4336813
Gene description
alpha-1,3/1,6-mannosyltransferase ALG2
Locus tag
OSNPB_040589600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 19.8), roots after flowering (RPKM 17.1) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 4
Exon count:
8
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (29803042..29805994)

Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene formin-like protein 20 Neighboring gene uncharacterized LOC4336812 Neighboring gene E3 ubiquitin-protein ligase PUB23 Neighboring gene late embryogenesis abundant protein 18

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GDP-Man:Man1GlcNAc2-PP-Dol alpha-1,3-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables alpha-1,3-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in oligosaccharide-lipid intermediate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-1,3/1,6-mannosyltransferase ALG2
Names
Os04g0589600

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

    Range
    29803042..29805994
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015780245.2 → XP_015635731.1  alpha-1,3/1,6-mannosyltransferase ALG2

    UniProtKB/TrEMBL
    A2XWY6, A3AWW3, Q7XLZ9
    Conserved Domains (1) summary
    cd03805
    Location:20 → 405
    GT4_ALG2-like; alpha-1,3/1,6-mannosyltransferase ALG2 and similar proteins
Nucleotide Protein
Heading Accession and Version

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