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LOC4336807 DNA replication ATP-dependent helicase/nuclease JHS1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336807, updated on 3-Dec-2024
Gene symbol
LOC4336807
Gene description
DNA replication ATP-dependent helicase/nuclease JHS1
Locus tag
OSNPB_040588200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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See LOC4336807 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
34
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (30225502..30236170)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (29719374..29730119)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA Z247 Neighboring gene uncharacterized LOC9266197 Neighboring gene nuclear poly(A) polymerase 4 Neighboring gene uncharacterized LOC112938637 Neighboring gene putative ABC transporter C family member 15

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5'-flap endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in replication fork reversal IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
DNA replication ATP-dependent helicase/nuclease JHS1
Names
DNA replication ATP-dependent helicase/nuclease DNA2
Os04g0588200

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    30225502..30236170
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015779083.3 → XP_015634569.2  DNA replication ATP-dependent helicase/nuclease JHS1 isoform X1

    UniProtKB/TrEMBL
    A2XWX2

  2. XM_066309219.1 → XP_066165316.1  DNA replication ATP-dependent helicase/nuclease JHS1 isoform X2

    UniProtKB/TrEMBL
    A2XWX2
Nucleotide Protein
Heading Accession and Version

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