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LOC4336624 serine racemase-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336624, updated on 17-Jul-2024
Gene symbol
LOC4336624
Gene description
serine racemase-like
Locus tag
OSNPB_040555900
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
serr; OsJ_15733
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See LOC4336624 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (28329023..28331801, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (27823819..27826627, complement)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene actin-depolymerizing factor 6-like Neighboring gene Arginine methyltransferase-interacting protein Neighboring gene copper-transporting ATPase HMA5-like Neighboring gene probable phospholipid hydroperoxide glutathione peroxidase

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Occurrence of D-serine in rice and characterization of rice serine racemase. Gogami Y, et al. Phytochemistry, 2009 Feb. PMID 19249065
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables D-serine ammonia-lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables L-serine ammonia-lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine racemase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables threonine racemase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in D-serine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
L-serine ammonia-lyase
Names
D-serine ammonia-lyase
D-serine dehydratase
L-serine dehydratase
LOC_Os04g46930
OSJNBb0012E24.7
serine racemase
serine racemase/serine dehydratase
NP_001406680.1
NP_001406681.1
XP_015637227.1
XP_015637228.1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001419751.1 → NP_001406680.1  L-serine ammonia-lyase

    Status: VALIDATED

    Source sequence(s)
    AB425957, CI037069, CI299594, CI634660
    UniProtKB/Swiss-Prot
    A0A0P0WDF8, A2XWA9, Q7XSN8

  2. NM_001419752.1 → NP_001406681.1  L-serine ammonia-lyase

    Status: VALIDATED

    Source sequence(s)
    AB425957, CI037069, CI299594, CI633915
    UniProtKB/Swiss-Prot
    A0A0P0WDF8, A2XWA9, Q7XSN8

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    28329023..28331801 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015781741.3 → XP_015637227.1  L-serine ammonia-lyase isoform X1

    UniProtKB/Swiss-Prot
    A0A0P0WDF8, A2XWA9, Q7XSN8
    Conserved Domains (1) summary
    PLN02970
    Location:12 → 338
    PLN02970; serine racemase

  2. XM_015781742.3 → XP_015637228.1  L-serine ammonia-lyase isoform X1

    UniProtKB/Swiss-Prot
    A0A0P0WDF8, A2XWA9, Q7XSN8
    Conserved Domains (1) summary
    PLN02970
    Location:12 → 338
    PLN02970; serine racemase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7XSN8.2 GenPept UniProtKB/Swiss-Prot:Q7XSN8

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