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LOC4336253 probable E3 ubiquitin-protein ligase ARI8 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336253, updated on 16-Jun-2026
Gene symbol
LOC4336253
Gene description
probable E3 ubiquitin-protein ligase ARI8
Locus tag
OSNPB_040492100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Location:
chromosome: 4
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (25078281..25085564)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (24581449..24588732)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene protein NRT1/ PTR FAMILY 4.5 Neighboring gene inositol transporter 1 Neighboring gene uncharacterized LOC107280649 Neighboring gene DNA-directed RNA polymerase III subunit 1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin conjugating enzyme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
probable E3 ubiquitin-protein ligase ARI8
Names
Os04g0492100

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    25078281..25085564
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015781074.3 → XP_015636560.1  probable E3 ubiquitin-protein ligase ARI8

    UniProtKB/TrEMBL
    B8AVV6, Q0JC49
    Conserved Domains (3) summary
    smart00647
    Location:203 → 265
    IBR; In Between Ring fingers
    cd16623
    Location:134 → 184
    RING-HC_RBR_TRIAD1_like; RING finger, HC subclass, found in two RING fingers and DRIL [double RING finger linked] 1 (TRIAD1), ankyrin repeat and IBR domain-containing protein 1 (ANKIB1) and similar proteins
    pfam01485
    Location:287 → 326
    IBR; IBR domain, a half RING-finger domain
Nucleotide Protein
Heading Accession and Version

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