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LOC4336008 cryptochrome-1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336008, updated on 3-Jun-2019

Summary

Gene symbol
LOC4336008
Gene description
cryptochrome-1
Locus tag
OSNPB_040452100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OsCRY2; OsCRY1b
Expression
Broad expression in roots after flowering (RPKM 52.3), leaves after flowering (RPKM 42.9) and 5 other tissues See more

Genomic context

See LOC4336008 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (22549877..22555039)

Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4336005 Neighboring gene probable protein phosphatase 2C 41 Neighboring gene probable serine/threonine-protein kinase ifkB Neighboring gene ubiquitin carboxyl-terminal hydrolase 4

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Pathways from BioSystems

  • Circadian rhythm - plant, organism-specific biosystem (from KEGG)
    Circadian rhythm - plant, organism-specific biosystemThe circadian system is an endogenous rhythm with the period of about 24 hours to provide temporal organization of biological activity. In Arabidopsis the circadian oscillator at the core of this sys...
  • Circadian rhythm - plant, conserved biosystem (from KEGG)
    Circadian rhythm - plant, conserved biosystemThe circadian system is an endogenous rhythm with the period of about 24 hours to provide temporal organization of biological activity. In Arabidopsis the circadian oscillator at the core of this sys...

General protein information

Preferred Names
cryptochrome-1
Names
Os04g0452100
cryptochrome 1b

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

    Range
    22549877..22555039
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015781120.2XP_015636606.1  cryptochrome-1 isoform X2

    UniProtKB/TrEMBL
    Q0JCS3
    Conserved Domains (4) summary
    TIGR02766
    Location:21497
    crypt_chrom_pln; cryptochrome, plant family
    pfam00875
    Location:20184
    DNA_photolyase; DNA photolyase
    pfam03441
    Location:224501
    FAD_binding_7; FAD binding domain of DNA photolyase
    pfam12546
    Location:526646
    Cryptochrome_C; Blue/Ultraviolet sensing protein C terminal
  2. XM_015781118.2XP_015636604.1  cryptochrome-1 isoform X1

    Conserved Domains (4) summary
    TIGR02766
    Location:21497
    crypt_chrom_pln; cryptochrome, plant family
    pfam00875
    Location:20184
    DNA_photolyase; DNA photolyase
    pfam03441
    Location:224501
    FAD_binding_7; FAD binding domain of DNA photolyase
    pfam12546
    Location:526646
    Cryptochrome_C; Blue/Ultraviolet sensing protein C terminal
  3. XM_015781119.1XP_015636605.1  cryptochrome-1 isoform X2

    UniProtKB/TrEMBL
    Q0JCS3
    Conserved Domains (4) summary
    TIGR02766
    Location:21497
    crypt_chrom_pln; cryptochrome, plant family
    pfam00875
    Location:20184
    DNA_photolyase; DNA photolyase
    pfam03441
    Location:224501
    FAD_binding_7; FAD binding domain of DNA photolyase
    pfam12546
    Location:526646
    Cryptochrome_C; Blue/Ultraviolet sensing protein C terminal
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