U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4336006 probable protein phosphatase 2C 41 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336006, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC4336006
Gene description
probable protein phosphatase 2C 41
Locus tag
OSNPB_040452000
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OsPP2C41; OsJ_014406
Expression
Broad expression in roots before flowering (RPKM 136.1), roots after flowering (RPKM 98.4) and 6 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (22534489..22541028, complement)

Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene 7-deoxyloganetin glucosyltransferase Neighboring gene uncharacterized LOC4336005 Neighboring gene cryptochrome-1 Neighboring gene probable serine/threonine-protein kinase ifkB

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable protein phosphatase 2C 41
Names
LOC_Os04g37904
OSJNBa0086B14.22/OSJNBa0086B14.21
Os04g0451900
XP_015636555.1
XP_015636556.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001419382.1 → NP_001406311.1  probable protein phosphatase 2C 41

    Status: VALIDATED

    Source sequence(s)
    CB674993, CB674994, CI543861, CI599096
    UniProtKB/Swiss-Prot
    A0A0P0WB16, B7F9X1, B9FFG5, Q7XQU7, Q7XQU8
    UniProtKB/TrEMBL
    B8AUF1, Q01J89

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

    Range
    22534489..22541028 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015781069.2 → XP_015636555.1  probable protein phosphatase 2C 41

    UniProtKB/Swiss-Prot
    Q7XQU7
    Conserved Domains (1) summary
    cd00143
    Location:34 → 282
    PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...

  2. XM_015781070.2 → XP_015636556.1  probable protein phosphatase 2C 41

    UniProtKB/Swiss-Prot
    A0A0P0WB16, B7F9X1, B9FFG5, Q7XQU7, Q7XQU8
    UniProtKB/TrEMBL
    B8AUF1, Q01J89
    Conserved Domains (1) summary
    cd00143
    Location:34 → 282
    PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7XQU7.2 GenPept UniProtKB/Swiss-Prot:Q7XQU7

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases