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LOC4335934 auxin response factor 9-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4335934, updated on 16-Jun-2026
Gene symbol
LOC4335934
Gene description
auxin response factor 9-like
Locus tag
OSNPB_040442000
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
ARF9
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See LOC4335934 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (22407767..22413549)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (22006221..22012016)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene protein NRT1/ PTR FAMILY 4.4 Neighboring gene uncharacterized LOC4335933 Neighboring gene polyadenylate-binding protein-interacting protein 7 Neighboring gene uncharacterized LOC4335936 Neighboring gene two-component response regulator ORR1-like

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to hormone IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
auxin response factor 9
Names
LOC_Os04g36054
OSJNBa0064D20.11

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001419353.1 → NP_001406282.1  auxin response factor 9

    Status: VALIDATED

    Source sequence(s)
    AK064925, CI640514, CI756114, CP132238
    UniProtKB/Swiss-Prot
    A0A0P0WAR6, Q0JCZ4, Q7XN92
    UniProtKB/TrEMBL
    B8AUB5

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    22407767..22413549
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066309157.1 → XP_066165254.1  auxin response factor 9 isoform X1

    UniProtKB/TrEMBL
    B8AUB5
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0JCZ4.1 GenPept UniProtKB/Swiss-Prot:Q0JCZ4

Gene LinkOut

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Molecular Biology Databases
Research Materials