U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4335926 protein TIC 40, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4335926, updated on 12-Jul-2024
Gene symbol
LOC4335926
Gene description
protein TIC 40, chloroplastic
Locus tag
OSNPB_040439900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
NEW
Try the new Gene table
Try the new Transcript table
See LOC4335926 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (22287056..22292850, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (21887017..21892982, complement)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4335923 Neighboring gene uncharacterized LOC4335924 Neighboring gene serine/threonine-protein kinase-like protein CCR4 Neighboring gene uncharacterized LOC4335927 Neighboring gene regulator of nonsense transcripts UPF3

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in chloroplast organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein import into chloroplast stroma IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in chloroplast thylakoid membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
protein TIC 40, chloroplastic
Names
Os04g0439900

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    22287056..22292850 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015781502.3 → XP_015636988.1  protein TIC 40, chloroplastic

    UniProtKB/TrEMBL
    B8AU34, B9FFC1, Q01K76, Q0JD02, Q7XQG5
    Conserved Domains (2) summary
    pfam16550
    Location:280 → 326
    RPN13_C; UCH-binding domain
    pfam17830
    Location:368 → 420
    STI1; STI1 domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials