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LOC4335887 protein PSK SIMULATOR 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4335887, updated on 12-Jul-2024
Gene symbol
LOC4335887
Gene description
protein PSK SIMULATOR 1
Locus tag
OSNPB_040433600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Location:
chromosome: 4
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (21938460..21942503, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (21539468..21543599, complement)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene protein EI24 homolog Neighboring gene uncharacterized LOC4335886 Neighboring gene ATP-dependent DNA helicase Q-like 4A Neighboring gene uncharacterized LOC107275971

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of growth IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
protein PSK SIMULATOR 1
Names
Os04g0433600

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    21938460..21942503 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015781509.3 → XP_015636995.1  protein PSK SIMULATOR 1

    UniProtKB/TrEMBL
    B8AU05, B9FF99, Q7XUZ4
    Conserved Domains (2) summary
    pfam05003
    Location:382 → 466
    DUF668; Protein of unknown function (DUF668)
    pfam11961
    Location:160 → 216
    DUF3475; Domain of unknown function (DUF3475)
Nucleotide Protein
Heading Accession and Version

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