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LOC4335090 syn-copalyl diphosphate synthase-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4335090, updated on 3-Dec-2024
Gene symbol
LOC4335090
Gene description
syn-copalyl diphosphate synthase-like
Locus tag
OSNPB_040178300
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
CPS4; CYC1; OsCPS4; OsCyc1; OsCPSsyn
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See LOC4335090 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (5410667..5419034)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (5318061..5326426)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136356091 Neighboring gene actin-related protein 9-like Neighboring gene 9-beta-pimara-7,15-diene oxidase-like Neighboring gene uncharacterized LOC136356038

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Reverse-genetic approach to verify physiological roles of rice phytoalexins: characterization of a knockdown mutant of OsCPS4 phytoalexin biosynthetic gene in rice. Toyomasu T, et al. Physiol Plant, 2014 Jan. PMID 23621683
  2. Biological functions of ent- and syn-copalyl diphosphate synthases in rice: key enzymes for the branch point of gibberellin and phytoalexin biosynthesis. Otomo K, et al. Plant J, 2004 Sep. PMID 15341631
  3. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. presence of two ent-CDP synthase isoforms in rice, one that participates in the biosynthesis of gibberelins and a second that is involved in the biosynthesis of phytoalexins. [OsCyc1][OsCyc2]
    Title: Biological functions of ent- and syn-copalyl diphosphate synthases in rice: key enzymes for the branch point of gibberellin and phytoalexin biosynthesis.
  2. OsCPS4 (locus Os04g0178300) encodes a syn-copalyl diphosphate synthase responsible for momilactones and oryzalexin S biosynthesis.
    Title: Reverse-genetic approach to verify physiological roles of rice phytoalexins: characterization of a knockdown mutant of OsCPS4 phytoalexin biosynthetic gene in rice.
Submit: New GeneRIF Correction

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables terpene synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in gibberellin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
syn-copalyl diphosphate synthase, chloroplastic
Names
LOC_Os04g09900
OSJNBa0096F01.12
Syn-CPP synthase
syn-CDP synthase
syn-copalyl diphosphate synthase
NP_001389265.1
NP_001389266.1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402336.1 → NP_001389265.1  syn-copalyl diphosphate synthase, chloroplastic isoform 1

    Status: VALIDATED

    Source sequence(s)
    AB066270, AK100631, CB671661, CI553459
    UniProtKB/Swiss-Prot
    A2XQW9, Q0JF02, Q68CM0, Q6E7D7, Q7XNG1

  2. NM_001402337.1 → NP_001389266.1  syn-copalyl diphosphate synthase, chloroplastic isoform 2

    Status: VALIDATED

    Source sequence(s)
    AB066270, AK100631, CB671661, CB671662, CI553459
    UniProtKB/Swiss-Prot
    A2XQW9, Q6E7D7

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    5410667..5419034
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0JF02.1 GenPept UniProtKB/Swiss-Prot:Q0JF02

Gene LinkOut

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Research Materials