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LOC4335068 lectin-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4335068, updated on 3-Dec-2024
Gene symbol
LOC4335068
Gene description
lectin-like
Locus tag
OSNPB_040173800
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
Agglutinin
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See LOC4335068 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (5097216..5098349, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (5005108..5006219, complement)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136356080 Neighboring gene uncharacterized LOC4335067 Neighboring gene uncharacterized LOC4335069 Neighboring gene pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Expression of rice lectin is governed by two temporally and spatially regulated mRNAs in developing embryos. Wilkins TA, et al. Plant Cell, 1989 May. PMID 2535550, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
lectin
Names
LOC_Os04g09390
OSJNBb0015C06.8

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402335.1 → NP_001389264.1  lectin precursor

    Status: VALIDATED

    Source sequence(s)
    CI152423, CI205806, CI685133, CI687979
    UniProtKB/Swiss-Prot
    A2XQZ8, B7EUA6, P11219, Q01MB6, Q0JF21, Q7FZU3, Q7XRY8, Q9SBW5, Q9XFF3, Q9XFF4
    UniProtKB/TrEMBL
    A0A067Y2H7, B8AR70

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    5097216..5098349 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0JF21.1 GenPept UniProtKB/Swiss-Prot:Q0JF21

Gene LinkOut

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Research Materials