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LOC4334824 exosome complex exonuclease RRP46 homolog [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334824, updated on 9-Aug-2018

Summary

Gene symbol
LOC4334824
Gene description
exosome complex exonuclease RRP46 homolog
Locus tag
OSNPB_030854200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
RRP46; oRrp46
Expression
Ubiquitous expression in flower buds (RPKM 15.3), leaves before flowering (RPKM 11.0) and 6 other tissues See more

Genomic context

See LOC4334824 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (35979769..35982427, complement)

Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene putative gamma-glutamylcyclotransferase At3g02910 Neighboring gene probable ADP-ribosylation factor GTPase-activating protein AGD9 Neighboring gene RNA-binding protein 34 Neighboring gene protein NUCLEAR FUSION DEFECTIVE 2 Neighboring gene heat stress transcription factor A-1-like

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

General gene information

Homology

General protein information

Preferred Names
exosome complex exonuclease RRP46 homolog
Names
Exosome component 5
LOC_Os03g63720
Os03g0854200
Ribosomal RNA-processing protein 46

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

    Range
    35979769..35982427 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015774938.2XP_015630424.1  exosome complex exonuclease RRP46 homolog

    UniProtKB/Swiss-Prot
    Q84T68
    Conserved Domains (2) summary
    cd11372
    Location:14227
    RNase_PH_RRP46; RRP46 subunit of eukaryotic exosome
    COG0689
    Location:5231
    Rph; Ribonuclease PH [Translation, ribosomal structure and biogenesis]

RNA

  1. XR_001544503.2 RNA Sequence

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