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LOC4334754 poly(ADP-ribose) glycohydrolase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334754, updated on 12-Jul-2024
Gene symbol
LOC4334754
Gene description
poly(ADP-ribose) glycohydrolase 1
Locus tag
OSNPB_030843900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (36443108..36447104, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (35470018..35474008, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene protein FAR1-RELATED SEQUENCE 6 Neighboring gene probable thiol methyltransferase 2 Neighboring gene putative pentatricopeptide repeat-containing protein At3g01580 Neighboring gene uncharacterized LOC4334755 Neighboring gene U1 spliceosomal RNA

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables poly(ADP-ribose) glycohydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ATP generation from poly-ADP-D-ribose IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleotide-sugar metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
poly(ADP-ribose) glycohydrolase 1
Names
Os03g0843900

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    36443108..36447104 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015774208.3 → XP_015629694.1  poly(ADP-ribose) glycohydrolase 1

    UniProtKB/TrEMBL
    A2XNY6, Q10AR2
    Conserved Domains (1) summary
    pfam05028
    Location:122 → 452
    PARG_cat; Poly (ADP-ribose) glycohydrolase (PARG)

RNA

  1. XR_010740206.1 RNA Sequence

Nucleotide Protein
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