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LOC4334738 shaggy-related protein kinase delta [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334738, updated on 3-Jun-2019

Summary

Gene symbol
LOC4334738
Gene description
shaggy-related protein kinase delta
Locus tag
OSNPB_030841800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in flower buds (RPKM 26.6), flowers (RPKM 25.3) and 6 other tissues See more

Genomic context

See LOC4334738 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
14
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (35385936..35392063, complement)

Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene anthocyanidin 5,3-O-glucosyltransferase Neighboring gene prohibitin-2, mitochondrial Neighboring gene prolycopene isomerase 1, chloroplastic Neighboring gene uncharacterized LOC107280350

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

General protein information

Preferred Names
shaggy-related protein kinase delta; shaggy-related protein kinase kappa
Names
Os03g0841800

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

    Range
    35385936..35392063 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015777621.2XP_015633107.1  shaggy-related protein kinase kappa isoform X1

    UniProtKB/TrEMBL
    Q6AVQ3
    Conserved Domains (2) summary
    smart00220
    Location:86370
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd14137
    Location:81373
    STKc_GSK3; The catalytic domain of the Serine/Threonine Kinase, Glycogen Synthase Kinase 3
  2. XM_015777622.2XP_015633108.1  shaggy-related protein kinase delta isoform X2

    Conserved Domains (1) summary
    cd14137
    Location:1243
    STKc_GSK3; The catalytic domain of the Serine/Threonine Kinase, Glycogen Synthase Kinase 3
  3. XM_015777623.2XP_015633109.1  shaggy-related protein kinase kappa isoform X3

    Conserved Domains (1) summary
    cl21453
    Location:88161
    PKc_like; Protein Kinases, catalytic domain
  4. XM_026024074.1XP_025879859.1  shaggy-related protein kinase kappa isoform X3

    Conserved Domains (1) summary
    cl21453
    Location:88161
    PKc_like; Protein Kinases, catalytic domain
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