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AA467197 expressed sequence AA467197 [ Mus musculus (house mouse) ]

Gene ID: 433470, updated on 15-Jul-2024

Summary

Official Symbol
AA467197provided by MGI
Official Full Name
expressed sequence AA467197provided by MGI
Primary source
MGI:MGI:3034182
See related
Ensembl:ENSMUSG00000033213 AllianceGenome:MGI:3034182
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Nmes1; mir-147
Summary
Acts upstream of or within response to bacterium. Located in mitochondrion. Orthologous to human C15orf48 (chromosome 15 open reading frame 48). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 38.7), large intestine adult (RPKM 13.5) and 4 other tissues See more
Orthologs
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Genomic context

See AA467197 in Genome Data Viewer
Location:
2 E5; 2 60.64 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (122479807..122482996)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (122637887..122641076)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene glycine amidinotransferase (L-arginine:glycine amidinotransferase) Neighboring gene STARR-positive B cell enhancer ABC_E9203 Neighboring gene STARR-positive B cell enhancer ABC_E7856 Neighboring gene AFG2 AAA ATPase homolog B Neighboring gene microRNA 147 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:122478177-122478415 Neighboring gene STARR-seq mESC enhancer starr_05561 Neighboring gene STARR-positive B cell enhancer ABC_E10135 Neighboring gene STARR-positive B cell enhancer mm9_chr2:122493578-122493879 Neighboring gene solute carrier family 30 (zinc transporter), member 4 Neighboring gene RIKEN cDNA 4930417H01 gene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General protein information

Preferred Names
normal mucosa of esophagus-specific gene 1 protein
Names
normal mucosa of esophagus specific 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001004174.2NP_001004174.1  normal mucosa of esophagus-specific gene 1 protein

    See identical proteins and their annotated locations for NP_001004174.1

    Status: VALIDATED

    Source sequence(s)
    AL772253
    Consensus CDS
    CCDS38224.1
    UniProtKB/Swiss-Prot
    Q810Q5
    UniProtKB/TrEMBL
    A2AK37, Q3UCF3
    Related
    ENSMUSP00000040781.9, ENSMUST00000047498.15
    Conserved Domains (1) summary
    pfam06522
    Location:976
    B12D; NADH-ubiquinone reductase complex 1 MLRQ subunit

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    122479807..122482996
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)