Format

Send to:

Choose Destination

LOC4334407 40S ribosomal protein S18 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334407, updated on 9-Aug-2018

Summary

Gene symbol
LOC4334407
Gene description
40S ribosomal protein S18
Locus tag
OSNPB_030794700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 207.2), mature seeds (RPKM 173.9) and 6 other tissues See more

Genomic context

See LOC4334407 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (33045728..33047468, complement)

Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene uncharacterized N-acetyltransferase p20 Neighboring gene uncharacterized N-acetyltransferase p20 Neighboring gene glutamate dehydrogenase 1, mitochondrial-like Neighboring gene 5'-3' exoribonuclease 4 Neighboring gene folate-biopterin transporter 1, chloroplastic

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

General gene information

Homology

General protein information

Preferred Names
40S ribosomal protein S18
Names
Os03g0794700

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

    Range
    33045728..33047468 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015774521.2XP_015630007.1  40S ribosomal protein S18

    UniProtKB/TrEMBL
    Q8H590
    Conserved Domains (2) summary
    PTZ00134
    Location:1152
    PTZ00134; 40S ribosomal protein S18; Provisional
    COG0099
    Location:12152
    RpsM; Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Support Center