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LOC4334290 glucose-6-phosphate isomerase, cytosolic A-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334290, updated on 3-Dec-2024
Gene symbol
LOC4334290
Gene description
glucose-6-phosphate isomerase, cytosolic A-like
Locus tag
OSNPB_030776000
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
GPI-A; PGI-A; PHI-A; OsJ_12779
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See LOC4334290 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (33146441..33153408)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (32175128..32182077)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112938261 Neighboring gene uncharacterized LOC136355725 Neighboring gene proline-rich receptor-like protein kinase PERK4 Neighboring gene actin cytoskeleton-regulatory complex protein SLA1-like

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Characterization of cDNA encoding for phosphoglucose isomerase of rice (Oryza sativa L.). Nozue F, et al. DNA Seq, 1996. PMID 8722567
  2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate derivative binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glucose-6-phosphate isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables monosaccharide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in gluconeogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glucose 6-phosphate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycolytic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
glucose-6-phosphate isomerase, cytosolic A
Names
LOC_Os03g56460
OSJNBa0070N04.5
Phosphoglucose isomerase A
Phosphohexose isomerase A
NP_001405659.1
NP_001405660.1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001418730.1 → NP_001405659.1  glucose-6-phosphate isomerase, cytosolic A

    Status: VALIDATED

    Source sequence(s)
    CB671576, CB684304, CB684305, CI537169, CI584188, CV723143
    UniProtKB/Swiss-Prot
    A0A0P0W3M8, P42862, Q10DK3, Q8H8M6
    UniProtKB/TrEMBL
    B8AKL0, U5KNJ7

  2. NM_001418731.1 → NP_001405660.1  glucose-6-phosphate isomerase, cytosolic A

    Status: VALIDATED

    Source sequence(s)
    CB671576, CB684304, CB684305, CI537169, CI588516, CI617893
    UniProtKB/Swiss-Prot
    A0A0P0W3M8, P42862, Q10DK3, Q8H8M6
    UniProtKB/TrEMBL
    B8AKL0, U5KNJ7

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    33146441..33153408
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P42862.2 GenPept UniProtKB/Swiss-Prot:P42862

Gene LinkOut

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Molecular Biology Databases
Research Materials