U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4334154 large ribosomal subunit protein uL13w [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334154, updated on 12-Jul-2024

Summary

Gene symbol
LOC4334154
Gene description
large ribosomal subunit protein uL13w
Locus tag
OSNPB_030756000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 250.0), flowers (RPKM 169.0) and 6 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See LOC4334154 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (32173733..32175632)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (31203301..31205307)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein uL13-like Neighboring gene small nucleolar RNA R12 Neighboring gene uncharacterized LOC4334153 Neighboring gene small nucleolar RNA R12 Neighboring gene small nucleolar RNA SNORD24 Neighboring gene transfer RNA arginine (anticodon ACG) Neighboring gene LRR receptor-like serine/threonine-protein kinase RPK2

Genomic regions, transcripts, and products

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in negative regulation of translation IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
large ribosomal subunit protein uL13w
Names
60S ribosomal protein L13a-4
Os03g0756000

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    32173733..32175632
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015776793.3XP_015632279.1  large ribosomal subunit protein uL13w

    UniProtKB/TrEMBL
    A0A0P0W383, A2XM46, A3AMU0, Q75J18
    Conserved Domains (1) summary
    PTZ00068
    Location:11202
    PTZ00068; 60S ribosomal protein L13a; Provisional