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LOC4334040 cyclin-H1-1-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334040, updated on 16-Jul-2024

Summary

Gene symbol
LOC4334040
Gene description
cyclin-H1-1-like
Locus tag
OSNPB_030737600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
CYCH-1; CYCH1-1; CycH1;1; OsJ_12494; Cyclin-H-1
Expression
Ubiquitous expression in flower buds (RPKM 9.4), mature seeds (RPKM 8.9) and 6 other tissues See more
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Genomic context

See LOC4334040 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (31118456..31123446)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (30235880..30241194)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4334038 Neighboring gene uncharacterized LOC4334039 Neighboring gene inositol 3-kinase-like Neighboring gene vacuolar protein sorting-associated protein 51 homolog

Genomic regions, transcripts, and products

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Pathways from PubChem

General protein information

Preferred Names
cyclin-H1-1
Names
LOC_Os03g52750
OSJNBa0084L17.8
OSJNBb0016H12.25

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001418709.1NP_001405638.1  cyclin-H1-1

    Status: VALIDATED

    Source sequence(s)
    AK105468
    UniProtKB/Swiss-Prot
    B7ESB2, Q10D80, Q6TUB9, Q84R39, Q9FZN6
    UniProtKB/TrEMBL
    B8AR48

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    31118456..31123446
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)