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LOC4333679 deoxyuridine 5'-triphosphate nucleotidohydrolase-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4333679, updated on 12-Jul-2024
Gene symbol
LOC4333679
Gene description
deoxyuridine 5'-triphosphate nucleotidohydrolase-like
Locus tag
OSNPB_030669100
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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See LOC4333679 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (27264092..27265199, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (26396355..26397480, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene acidic leucine-rich nuclear phosphoprotein 32-related protein 2-like Neighboring gene DEAD-box ATP-dependent RNA helicase 10-like Neighboring gene guanine nucleotide-binding protein subunit beta-like Neighboring gene glucan endo-1,3-beta-glucosidase 7

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dUTP diphosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in dUMP biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dUTP catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
deoxyuridine 5'-triphosphate nucleotidohydrolase-like
Names
Os03g0669100
deoxyuridine 5'-triphosphate nucleotidohydrolase

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001418403.1 → NP_001405332.1  deoxyuridine 5'-triphosphate nucleotidohydrolase-like

    Status: VALIDATED

    Source sequence(s)
    CI061645, CI643066

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    27264092..27265199 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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