U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4333613 3-isopropylmalate dehydrogenase 2, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4333613, updated on 12-Jul-2024
Gene symbol
LOC4333613
Gene description
3-isopropylmalate dehydrogenase 2, chloroplastic
Locus tag
OSNPB_030655700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
NEW
Try the new Gene table
Try the new Transcript table
See LOC4333613 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (26453102..26457464)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (25586202..25590665)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene protein VAPYRIN Neighboring gene protein FAR1-RELATED SEQUENCE 5 Neighboring gene uncharacterized LOC9270178 Neighboring gene uncharacterized LOC112938255

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3-isopropylmalate dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables NAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-leucine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
3-isopropylmalate dehydrogenase 2, chloroplastic
Names
Os03g0655700

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    26453102..26457464
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015777770.3 → XP_015633256.1  3-isopropylmalate dehydrogenase 2, chloroplastic

    UniProtKB/TrEMBL
    A0A0P0W1E6, Q10FT9, Q7Y096
    Conserved Domains (1) summary
    PRK00772
    Location:43 → 400
    PRK00772; 3-isopropylmalate dehydrogenase; Provisional
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials