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LOC4332773 60S ribosomal protein L19-1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4332773, updated on 9-Aug-2018

Summary

Gene symbol
LOC4332773
Gene description
60S ribosomal protein L19-1
Locus tag
OSNPB_030337800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 309.5), mature seeds (RPKM 297.1) and 6 other tissues See more

Genomic context

See LOC4332773 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (12542336..12544701, complement)

Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene uroporphyrinogen decarboxylase 2, chloroplastic-like Neighboring gene GPN-loop GTPase 3 Neighboring gene fumarate hydratase 1, mitochondrial Neighboring gene alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

General gene information

Homology

Gene Ontology Provided by Gramene

Component Evidence Code Pubs
mitochondrion RCA
inferred from Reviewed Computational Analysis
more info
 

General protein information

Preferred Names
60S ribosomal protein L19-1
Names
Os03g0337800

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

    Range
    12542336..12544701 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015777118.2XP_015632604.1  60S ribosomal protein L19-1

    UniProtKB/TrEMBL
    Q10LR6
    Conserved Domains (1) summary
    cd01417
    Location:4167
    Ribosomal_L19e_E; Ribosomal protein L19e, eukaryotic. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an ...
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