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LOC4332745 photosystem II repair protein PSB27-H1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4332745, updated on 13-Jul-2024
Gene symbol
LOC4332745
Gene description
photosystem II repair protein PSB27-H1, chloroplastic
Locus tag
OSNPB_030333400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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See LOC4332745 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (12375928..12376818)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (12320861..12321769)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 2 subunit beta Neighboring gene small nucleolar RNA SNORD34 Neighboring gene small nucleolar RNA SNORD34 Neighboring gene E3 ubiquitin ligase PARAQUAT TOLERANCE 3 Neighboring gene uncharacterized LOC4332746

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in photosystem II assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in photosystem II repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast thylakoid lumen IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of photosystem II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
photosystem II repair protein PSB27-H1, chloroplastic
Names
Os03g0333400
photosystem II 11 kDa protein

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    12375928..12376818
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015777286.3 → XP_015632772.1  photosystem II repair protein PSB27-H1, chloroplastic

    UniProtKB/TrEMBL
    A3AHM7, B8ANZ3, Q10LV7
    Conserved Domains (1) summary
    PLN00064
    Location:2 → 165
    PLN00064; photosystem II protein Psb27; Provisional
Nucleotide Protein
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