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LOC4332518 transcription factor bHLH140 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4332518, updated on 16-Jun-2026
Gene symbol
LOC4332518
Gene description
transcription factor bHLH140
Locus tag
OSNPB_030293400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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See LOC4332518 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (10263083..10266496)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (10212334..10215768)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4332516 Neighboring gene transfer RNA histidin (anticodon GUG) Neighboring gene pyruvate decarboxylase 2-like Neighboring gene uncharacterized LOC9267415

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA 5'-adenosine monophosphate hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mismatched DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-strand break-containing DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in single strand break repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
transcription factor bHLH140
Names
Os03g0293400

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    10263083..10266496
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015772734.3 → XP_015628220.1  transcription factor bHLH140

    UniProtKB/TrEMBL
    B8ALM5
    Conserved Domains (4) summary
    pfam11969
    Location:585 → 680
    DcpS_C; Scavenger mRNA decapping enzyme C-term binding
    pfam13671
    Location:38 → 170
    AAA_33; AAA domain
    pfam16278
    Location:685 → 740
    zf-C2HE; C2HE / C2H2 / C2HC zinc-binding finger
    cl00019
    Location:365 → 466
    Macro_SF; macrodomain superfamily
Nucleotide Protein
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