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LOC4332097 glucan endo-1,3-beta-glucosidase 3 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4332097, updated on 12-Jul-2024
Gene symbol
LOC4332097
Gene description
glucan endo-1,3-beta-glucosidase 3
Locus tag
OSNPB_030221500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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See LOC4332097 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (6417189..6421270)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (6369444..6373697)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene homocysteine S-methyltransferase 1 Neighboring gene uncharacterized LOC4332096 Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 Neighboring gene uncharacterized LOC4332100

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
glucan endo-1,3-beta-glucosidase 3
Names
Os03g0221500

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    6417189..6421270
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015773172.3 → XP_015628658.1  glucan endo-1,3-beta-glucosidase 3 isoform X1

    UniProtKB/TrEMBL
    A0A0P0VV09, A2XE16, A3AFL0, Q8H822
    Conserved Domains (2) summary
    smart00768
    Location:363 → 448
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:26 → 346
    Glyco_hydro; Glycosyl hydrolases

  2. XM_015773173.3 → XP_015628659.1  glucan endo-1,3-beta-glucosidase 3 isoform X3

    Conserved Domains (2) summary
    smart00768
    Location:330 → 415
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:5 → 313
    Glyco_hydro; Glycosyl hydrolases

  3. XM_066308276.1 → XP_066164373.1  glucan endo-1,3-beta-glucosidase 3 isoform X2

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials