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LOC4332087 DEAD-box ATP-dependent RNA helicase 47B-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4332087, updated on 30-May-2026
Gene symbol
LOC4332087
Gene description
DEAD-box ATP-dependent RNA helicase 47B-like
Locus tag
OSNPB_030219700
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OsJ_09947
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See LOC4332087 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (6333498..6335946, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (6286011..6288458, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene protein BOLA1, chloroplastic Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene uncharacterized LOC9270711 Neighboring gene large ribosomal subunit protein uL15c

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
DEAD-box ATP-dependent RNA helicase 47B
Names
LOC_Os03g12000
NP_001404347.1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001417418.1 → NP_001404347.1  DEAD-box ATP-dependent RNA helicase 47B

    Status: VALIDATED

    Source sequence(s)
    AK071610, AU100653, CP132237
    UniProtKB/Swiss-Prot
    B7EJN3, Q10PV9
    UniProtKB/TrEMBL
    A2XE07

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    6333498..6335946 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q10PV9.1 GenPept UniProtKB/Swiss-Prot:Q10PV9

Gene LinkOut

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Research Materials