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LOC4332082 superoxide dismutase [Cu-Zn] 2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4332082, updated on 25-Sep-2017
Gene symbol
LOC4332082
Gene description
superoxide dismutase [Cu-Zn] 2
Locus tag
OSNPB_030219200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flowers (RPKM 42.1), flower buds (RPKM 42.1) and 6 other tissues See more
See LOC4332082 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
101 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (6271988..6275400, complement)

Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene heat shock 70 kDa protein 8 Neighboring gene uncharacterized LOC4332081 Neighboring gene tubulin alpha-2 chain Neighboring gene beta-hexosaminidase 2 Neighboring gene protein BOLA1, chloroplastic

Genomic Sequence:
NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

  • Peroxisome, organism-specific biosystem (from KEGG)
    Peroxisome, organism-specific biosystemPeroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ...
  • Peroxisome, conserved biosystem (from KEGG)
    Peroxisome, conserved biosystemPeroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ...
Preferred Names
superoxide dismutase [Cu-Zn] 2
Names
Os03g0219200

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

    Range
    6271988..6275400 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015775916.1XP_015631402.1  superoxide dismutase [Cu-Zn] 2 isoform X1

    UniProtKB/TrEMBL
    Q10PW4
    Conserved Domains (1) summary
    cl00891
    Location:1163
    Cu-Zn_Superoxide_Dismutase; Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the ...
  2. XM_015775917.1XP_015631403.1  superoxide dismutase [Cu-Zn] 2 isoform X2

    Conserved Domains (1) summary
    cl00891
    Location:1138
    Cu-Zn_Superoxide_Dismutase; Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the ...
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