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LOC4331875 protein EMBRYO DEFECTIVE 514 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4331875, updated on 16-Jun-2026
Gene symbol
LOC4331875
Gene description
protein EMBRYO DEFECTIVE 514
Locus tag
OSNPB_030187000
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (4556494..4559154)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (4545276..4547960)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene vacuolar protein-sorting-associated protein 37 homolog 1 Neighboring gene aspartyl protease 25-like Neighboring gene protein CutA 1, chloroplastic-like Neighboring gene uncharacterized LOC112938316 Neighboring gene protein ALTERED SEED GERMINATION 2

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in chloroplast organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chloroplast rRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleologenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
protein EMBRYO DEFECTIVE 514
Names
Os03g0187000
protein DCL, chloroplastic

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001417292.1 → NP_001404221.1  protein EMBRYO DEFECTIVE 514

    Status: VALIDATED

    Source sequence(s)
    AK059827, CI295601, CI735491
    UniProtKB/TrEMBL
    B7E454, B8APQ5, Q0DUG8, Q10QR1

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    4556494..4559154
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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