U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4331854 15-cis-phytoene desaturase, chloroplastic/chromoplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4331854, updated on 3-Dec-2024
Gene symbol
LOC4331854
Gene description
15-cis-phytoene desaturase, chloroplastic/chromoplastic
Locus tag
OSNPB_030184000
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
PDS; PDS1
Try the new Gene page
Try the new Transcripts and proteins table
See LOC4331854 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (4419790..4425561)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (4409078..4414819)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene protein STRUBBELIG-RECEPTOR FAMILY 7 Neighboring gene ATPase 10, plasma membrane-type Neighboring gene uncharacterized LOC4331855 Neighboring gene uncharacterized LOC9267042

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phytoene dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carotenoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast thylakoid IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
15-cis-phytoene desaturase, chloroplastic/chromoplastic
Names
LOC_Os03g08570
OSJNBa0032G08.5
Phytoene desaturase
phytoene dehydrogenase, chloroplastic/chromoplastic
NP_001404184.1
XP_015633100.1
XP_015633101.1
XP_066164219.1
XP_066164220.1

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001417255.1 → NP_001404184.1  15-cis-phytoene desaturase, chloroplastic/chromoplastic

    Status: VALIDATED

    Source sequence(s)
    AP014959
    UniProtKB/TrEMBL
    B8APP7

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    4419790..4425561
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015777615.3 → XP_015633101.1  15-cis-phytoene desaturase, chloroplastic/chromoplastic isoform X2

    UniProtKB/Swiss-Prot
    A0A0P0VTZ9, A2XDA1, Q0DUI8, Q10QT5, Q93Y74, Q9ZTN9
    UniProtKB/TrEMBL
    B8APP7
    Conserved Domains (1) summary
    PLN02612
    Location:21 → 578
    PLN02612; phytoene desaturase

  2. XM_066308122.1 → XP_066164219.1  15-cis-phytoene desaturase, chloroplastic/chromoplastic isoform X2

    UniProtKB/Swiss-Prot
    A0A0P0VTZ9, A2XDA1, Q0DUI8, Q10QT5, Q93Y74, Q9ZTN9
    UniProtKB/TrEMBL
    B8APP7

  3. XM_015777614.3 → XP_015633100.1  15-cis-phytoene desaturase, chloroplastic/chromoplastic isoform X1

    UniProtKB/TrEMBL
    B8APP7
    Conserved Domains (1) summary
    PLN02612
    Location:21 → 584
    PLN02612; phytoene desaturase

  4. XM_066308123.1 → XP_066164220.1  15-cis-phytoene desaturase, chloroplastic/chromoplastic isoform X3

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0DUI8.2 GenPept UniProtKB/Swiss-Prot:Q0DUI8

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials