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LOC4331439 nascent polypeptide-associated complex subunit alpha-like protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4331439, updated on 9-Aug-2018

Summary

Gene symbol
LOC4331439
Gene description
nascent polypeptide-associated complex subunit alpha-like protein 1
Locus tag
OSNPB_030121700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in leaves before flowering (RPKM 91.7), leaves after flowering (RPKM 49.5) and 4 other tissues See more

Genomic context

See LOC4331439 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (1194260..1195715)

Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene syntaxin-52-like Neighboring gene peroxidase 5-like Neighboring gene endoribonuclease Dicer homolog 1 Neighboring gene serine/threonine-protein kinase ATG1a Neighboring gene transcription factor bHLH57

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

General gene information

Markers

Homology

General protein information

Preferred Names
nascent polypeptide-associated complex subunit alpha-like protein 1
Names
Os03g0121700
putative nascent polypeptide-associated complex alpha chain

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

    Range
    1194260..1195715
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015775700.2XP_015631186.1  nascent polypeptide-associated complex subunit alpha-like protein 1

    UniProtKB/TrEMBL
    Q8LMR3
    Conserved Domains (3) summary
    COG1308
    Location:82220
    EGD2; Transcription factor homologous to NACalpha-BTF3 [Transcription]
    cd14358
    Location:184220
    UBA_NAC_euk; UBA-like domain found in nascent polypeptide-associated complex subunit alpha (NACA) and its homologs mainly found in eukaryotes
    pfam01849
    Location:83136
    NAC; NAC domain
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