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LOC4331189 large ribosomal subunit protein bL9c [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4331189, updated on 12-Jul-2024
Gene symbol
LOC4331189
Gene description
large ribosomal subunit protein bL9c
Locus tag
OSNPB_020822600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1119_A01.23-1
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See LOC4331189 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (35819184..35821658, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (35320468..35322981, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene NAC domain-containing protein 78 Neighboring gene phosphatidylinositol 4-phosphate 5-kinase 9 Neighboring gene 4-coumarate--CoA ligase-like 3 Neighboring gene acyl-CoA-binding domain-containing protein 4 Neighboring gene U-box domain-containing protein 33

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
large ribosomal subunit protein bL9c
Names
50S ribosomal protein L9, chloroplastic
Os02g0822600
putative 50S ribosomal protein L9, chloroplast

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    35819184..35821658 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015769206.3 → XP_015624692.1  large ribosomal subunit protein bL9c

    UniProtKB/TrEMBL
    A0A5S6R9G6, A3ACT6, Q0DWB3, Q6KA00
    Conserved Domains (1) summary
    PRK00137
    Location:41 → 186
    rplI; 50S ribosomal protein L9; Reviewed
Nucleotide Protein
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