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LOC4330947 anaphase-promoting complex subunit 4 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330947, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4330947
Gene description
anaphase-promoting complex subunit 4
Locus tag
OSNPB_020785900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1316_E06.7; OJ1715_H01.44
Expression
Ubiquitous expression in flower buds (RPKM 3.9), leaves before flowering (RPKM 3.8) and 6 other tissues See more
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Genomic context

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See LOC4330947 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (33857931..33867676)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (33361853..33371826)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin ligase PARAQUAT TOLERANCE 3-like Neighboring gene large ribosomal subunit protein eL33w Neighboring gene uncharacterized LOC9267267 Neighboring gene uncharacterized LOC4330949

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anaphase-promoting complex-dependent catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K11-linked ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of anaphase-promoting complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nuclear periphery IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
anaphase-promoting complex subunit 4
Names
Os02g0785900
transducin family protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    33857931..33867676
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015767762.3 → XP_015623248.1  anaphase-promoting complex subunit 4 isoform X1

    UniProtKB/TrEMBL
    B8AE12
    Conserved Domains (4) summary
    COG2319
    Location:36 → 239
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:72 → 108
    7WD40; WD40 repeat [structural motif]
    pfam12894
    Location:34 → 121
    ANAPC4_WD40; Anaphase-promoting complex subunit 4 WD40 domain
    pfam12896
    Location:268 → 470
    ANAPC4; Anaphase-promoting complex, cyclosome, subunit 4

  2. XM_015767763.3 → XP_015623249.1  anaphase-promoting complex subunit 4 isoform X2

    UniProtKB/TrEMBL
    B8AE12
    Conserved Domains (4) summary
    COG2319
    Location:36 → 239
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:72 → 108
    7WD40; WD40 repeat [structural motif]
    pfam12894
    Location:34 → 121
    ANAPC4_WD40; Anaphase-promoting complex subunit 4 WD40 domain
    pfam12896
    Location:268 → 470
    ANAPC4; Anaphase-promoting complex, cyclosome, subunit 4
Nucleotide Protein
Heading Accession and Version

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