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LOC4330673 pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330673, updated on 19-Feb-2025
Gene symbol
LOC4330673
Gene description
pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial-like
Locus tag
OSNPB_020739600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
PDHE1-A; OsJ_08320
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See LOC4330673 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (31413909..31418092, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (30918816..30922959, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene DExH-box ATP-dependent RNA helicase DExH15 chloroplastic Neighboring gene formin-like protein 16 Neighboring gene probable galacturonosyltransferase-like 9 Neighboring gene E2F transcription factor-like E2FE Neighboring gene TORTIFOLIA1-like protein 3

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyruvate dehydrogenase (acetyl-transferring) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in pyruvate decarboxylation to acetyl-CoA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial
Names
LOC_Os02g50620
P0684F11.25
putative pyruvate dehydrogenase E1 alpha subunit
NP_001403808.1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001416879.1 → NP_001403808.1  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial

    Status: VALIDATED

    Source sequence(s)
    CB678946, CB682290, CI128071, CI651794
    UniProtKB/Swiss-Prot
    A0A0P0VP76, Q6Z5N4

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    31413909..31418092 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6Z5N4.1 GenPept UniProtKB/Swiss-Prot:Q6Z5N4

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials