U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4330657 dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330657, updated on 17-Jul-2024
Gene symbol
LOC4330657
Gene description
dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic
Locus tag
OSNPB_020736400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
NEW
Try the new Gene table
Try the new Transcript table
See LOC4330657 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (31240729..31244328, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (30745579..30749371, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene microtubule-associated protein 70-2-like Neighboring gene probable RNA-dependent RNA polymerase 1 Neighboring gene MACPF domain-containing protein At1g14780 Neighboring gene nicastrin Neighboring gene ATP-dependent RNA helicase DEAH13 Neighboring gene uncharacterized LOC136355125

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. The OsDHODH1 gene is involved in salt and drought tolerance in rice. Liu WY, et al. J Integr Plant Biol, 2009 Sep. PMID 19723241
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables dihydropyrimidine dehydrogenase (NADP+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables uracil binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in thymine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in uracil catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic
Names
Os02g0736400
P0487D09.22
putative dihydroorotate dehydrogenase
putative dihydropyrimidine dehydrogenase

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    31240729..31244328 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015771588.3 → XP_015627074.1  dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic

    UniProtKB/TrEMBL
    A0A0A0QMT3, B8AI32, Q0DXS1, Q6Z744
    Conserved Domains (1) summary
    PLN02495
    Location:31 → 414
    PLN02495; oxidoreductase, acting on the CH-CH group of donors
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials