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LOC4330653 E3 ubiquitin protein ligase RIE1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330653, updated on 17-Jul-2024
Gene symbol
LOC4330653
Gene description
E3 ubiquitin protein ligase RIE1
Locus tag
OSNPB_020735900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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See LOC4330653 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (31196828..31199357, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (30701808..30704489, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat-containing protein At2g01680 Neighboring gene pentatricopeptide repeat-containing protein At4g04370 Neighboring gene uncharacterized LOC112937982 Neighboring gene microtubule-associated protein 70-2-like

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plant-type vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
E3 ubiquitin protein ligase RIE1
Names
Os02g0735900
P0487D09.15
RING zinc finger protein-like
putative RING zinc finger protein

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    31196828..31199357 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015771537.3 → XP_015627023.1  E3 ubiquitin protein ligase RIE1

    UniProtKB/TrEMBL
    B8AI29
    Conserved Domains (2) summary
    COG5540
    Location:268 → 357
    COG5540; RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
    cl17238
    Location:315 → 359
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
Nucleotide Protein
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