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LOC4330463 U-box domain-containing protein 6 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330463, updated on 17-Jul-2024
Gene symbol
LOC4330463
Gene description
U-box domain-containing protein 6
Locus tag
OSNPB_020705600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (29627072..29632997, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (29135006..29141612, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene tubby-like F-box protein 5 Neighboring gene universal stress protein PHOS34 Neighboring gene basic helix-loop-helix protein 79-like Neighboring gene uncharacterized LOC136355432 Neighboring gene protein RADIALIS-like 3

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
U-box domain-containing protein 6
Names
Os02g0705600
P0680A05.13
armadillo repeat containing protein-like
putative bg55

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    29627072..29632997 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015771155.3 → XP_015626641.1  U-box domain-containing protein 6

    UniProtKB/TrEMBL
    B8AH98, Q0DYA5, Q6Z2G6
    Conserved Domains (2) summary
    smart00504
    Location:273 → 336
    Ubox; Modified RING finger domain
    PLN03200
    Location:542 → 706
    PLN03200; cellulose synthase-interactive protein; Provisional
Nucleotide Protein
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