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LOC4330434 cyclin-dependent kinase F-4-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330434, updated on 3-Dec-2024
Gene symbol
LOC4330434
Gene description
cyclin-dependent kinase F-4-like
Locus tag
OSNPB_020700600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
CDKF-4; CDKF;4; OsJ_08052; OJ1111_E07.13-1; OJ1111_E07.13-2
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See LOC4330434 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (29310813..29316675)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (28820774..28826605)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene ubiquinol oxidase 1c, mitochondrial-like Neighboring gene polyamine transporter PUT1-like Neighboring gene protein Brevis radix-like 2 Neighboring gene growth-regulating factor 4-like

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
cyclin-dependent kinase F-4
Names
LOC_Os02g47220
P0459B01.42-1
P0459B01.42-2
Serine/threonine-protein kinase MHK-like protein 2
putative serine/threonine-protein kinase Mak
NP_001388851.1
NP_001388852.1
XP_066163141.1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001401922.1 → NP_001388851.1  cyclin-dependent kinase F-4

    Status: VALIDATED

    Source sequence(s)
    AK100966, AK101989, CI443825, CI597687
    UniProtKB/Swiss-Prot
    B7EPX3, Q6Z8C8
    UniProtKB/TrEMBL
    B8AH80

  2. NM_001401923.1 → NP_001388852.1  cyclin-dependent kinase F-4

    Status: VALIDATED

    Source sequence(s)
    AK100056, CI443825, CI710464
    UniProtKB/Swiss-Prot
    B7EPX3, Q6Z8C8
    UniProtKB/TrEMBL
    B8AH80

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    29310813..29316675
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066307044.1 → XP_066163141.1  cyclin-dependent kinase F-4 isoform X1

    UniProtKB/Swiss-Prot
    B7EPX3, Q6Z8C8
    UniProtKB/TrEMBL
    B8AH80
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6Z8C8.1 GenPept UniProtKB/Swiss-Prot:Q6Z8C8

Gene LinkOut

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Molecular Biology Databases
Research Materials