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LOC4330000 two-component response regulator-like PRR1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330000, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4330000
Gene description
two-component response regulator-like PRR1
Locus tag
OSNPB_020618200
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
PRR1; OsPRR1; OsJ_07546; OJ1212_C01.9; OJ1014_H03.23
Expression
Broad expression in leaves before flowering (RPKM 111.1), roots after flowering (RPKM 82.8) and 5 other tissues See more
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Genomic context

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See LOC4330000 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (25052018..25055115)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (24569299..24572523)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA snoR136 Neighboring gene glutaredoxin-C4, chloroplastic-like Neighboring gene H/ACA ribonucleoprotein complex subunit 3-like protein Neighboring gene transcription factor MYB57

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. The evolutionarily conserved OsPRR quintet: rice pseudo-response regulators implicated in circadian rhythm. Murakami M, et al. Plant Cell Physiol, 2003 Nov. PMID 14634161
  2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytokinin-activated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphorelay signal transduction system IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
two-component response regulator-like PRR1
Names
LOC_Os02g40510
pseudo-response regulator 1
putative timing of CAB expression 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001416743.1 → NP_001403672.1  two-component response regulator-like PRR1

    Status: VALIDATED

    Source sequence(s)
    AB189038, AK111828, AP014958, CB650674, CB664831, CI581539
    UniProtKB/Swiss-Prot
    A0A0P0VLS5, Q0DZH6, Q689G9, Q6K951
    UniProtKB/TrEMBL
    B8AFH0

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    25052018..25055115
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q689G9.2 GenPept UniProtKB/Swiss-Prot:Q689G9