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LOC4329968 calcium uptake protein, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329968, updated on 12-Jul-2024
Gene symbol
LOC4329968
Gene description
calcium uptake protein, mitochondrial
Locus tag
OSNPB_020613000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1004_A05.37
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See LOC4329968 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (24641222..24645860)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (24158323..24163075)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene sister chromatid cohesion protein PDS5 homolog C Neighboring gene temperature-induced lipocalin-1 Neighboring gene probable glycosyltransferase At5g20260 Neighboring gene uncharacterized LOC4329969

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium import into the mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial calcium ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of uniplex complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
calcium uptake protein, mitochondrial
Names
Os02g0613000
calcium uptake protein 1, mitochondrial
putative calcium binding atopy-related autoantigen 1

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    24641222..24645860
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015771793.2 → XP_015627279.1  calcium uptake protein, mitochondrial

    UniProtKB/TrEMBL
    B8AFE5
    Conserved Domains (4) summary
    COG5126
    Location:282 → 432
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]
    cd00051
    Location:176 → 233
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam13499
    Location:176 → 232
    EF-hand_7; EF-hand domain pair
    pfam13833
    Location:377 → 429
    EF-hand_8; EF-hand domain pair
Nucleotide Protein
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