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LOC4329900 protein phosphatase inhibitor 2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329900, updated on 3-Dec-2024
Gene symbol
LOC4329900
Gene description
protein phosphatase inhibitor 2
Locus tag
OSNPB_020602300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1669_F01.10; OJ1669_F01.11; OJ1791_B03.48; OJ1791_B03.49
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See LOC4329900 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (24055477..24058026)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (23572951..23578283)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene cyclin-dependent kinase G-1-like Neighboring gene zinc finger BED domain-containing protein RICESLEEPER 1-like Neighboring gene transcription termination factor MTERF5, chloroplastic-like Neighboring gene uncharacterized LOC4329902

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein phosphatase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
protein phosphatase inhibitor 2
Names
Os02g0602300
Os02g0602400
mitochondrial transcription termination factor-like protein
transcription termination factor MTERF5, chloroplastic

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    24055477..24058026
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066307419.1 → XP_066163516.1  protein phosphatase inhibitor 2

    UniProtKB/TrEMBL
    A0A0P0VL97, A2X6X2, Q6K5F6

  2. XM_015770452.3 → XP_015625938.1  protein phosphatase inhibitor 2

    UniProtKB/TrEMBL
    A0A0P0VL97, A2X6X2, Q6K5F6
    Conserved Domains (1) summary
    pfam04979
    Location:17 → 177
    IPP-2; Protein phosphatase inhibitor 2 (IPP-2)
Nucleotide Protein
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