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LOC4329853 beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329853, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4329853
Gene description
beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase
Locus tag
OSNPB_020594900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1126_D09.18
Expression
Broad expression in roots before flowering (RPKM 118.2), roots after flowering (RPKM 42.7) and 5 other tissues See more
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Genomic context

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Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (23069732..23072541, complement)

Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene BTB/POZ domain-containing protein At1g67900 Neighboring gene NAC domain-containing protein 73 Neighboring gene beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase Neighboring gene uncharacterized LOC4329855 Neighboring gene uncharacterized LOC4329856

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase
Names
Os02g0594900
glycosyl transferase-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

    Range
    23069732..23072541 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015767193.2 → XP_015622679.1  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase isoform X2

    UniProtKB/TrEMBL
    A2X6Q3, Q0DZW5, Q6ZI62
    Conserved Domains (1) summary
    pfam04724
    Location:42 → 389
    Glyco_transf_17; Glycosyltransferase family 17

  2. XM_026022643.1 → XP_025878428.1  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase isoform X1

    UniProtKB/TrEMBL
    A2X6Q3
    Conserved Domains (1) summary
    pfam04724
    Location:65 → 412
    Glyco_transf_17; Glycosyltransferase family 17

  3. XM_015767195.2 → XP_015622681.1  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase isoform X3

    UniProtKB/TrEMBL
    A3A8L8
    Conserved Domains (1) summary
    pfam04724
    Location:31 → 378
    Glyco_transf_17; Glycosyltransferase family 17
Nucleotide Protein
Heading Accession and Version

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