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Gm5475 predicted gene 5475 [ Mus musculus (house mouse) ]

Gene ID: 432982, updated on 26-Sep-2022

Summary

Official Symbol
Gm5475provided by MGI
Official Full Name
predicted gene 5475provided by MGI
Primary source
MGI:MGI:3646320
See related
Ensembl:ENSMUSG00000087444 AllianceGenome:MGI:3646320
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG432982
Expression
Biased expression in duodenum adult (RPKM 1.1), small intestine adult (RPKM 0.6) and 9 other tissues See more
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Genomic context

See Gm5475 in Genome Data Viewer
Location:
15 F1; 15
Exon count:
3
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (100321074..100326031)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (100423193..100428150)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene methyltransferase like 7A2 Neighboring gene methyltransferase hypoxia inducible domain containing 1 Neighboring gene HIG1 domain family, member 1C Neighboring gene predicted gene, 53911 Neighboring gene solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2 Neighboring gene RIKEN cDNA 5330439K02 gene Neighboring gene LETM1 domain containing 1 Neighboring gene cysteine-serine-rich nuclear protein 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040351.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK163173, BC147350
    Related
    ENSMUST00000148928.2

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    100321074..100326031
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001034883.2: Suppressed sequence

    Description
    NM_001034883.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.